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Competition in the Crypt
Here is an image of the small intestine, zoomed in on the crypts. The “Confetti” gene was activated in all cells in the intestine, including stem cells. Once the Cre recombination process is over, each stem cell produces progeny that inherit the same fluorescent marking. The number of cells in the crypt is fixed. Thus, over time, stem cells (~14) compete each other out of this niche, and the crypt becomes clonal, visualized here by monochromatic crypts.
Image: This image was taken 4 months after Cre activation using a Leica Sp5 microscope. Clonal conveyor belts from the crypt base to the top of villi are imaged with four different colors at 40x magnification.




